General Information

Row

Metadata

Row

Number of samples per category

Number of sequences per sample

Alpha Plots

Row

Group rarefaction Curves

Samples rarefaction Curves

Row

Observed Features

Shannon

Alpha Tables

Row

Anova Table

Tukey HSD

Row

Treatment comparison

Treatment table

Beta diversity

Row

2D PCOA

3D PCOA

Row

PERMANOVA: comparing treatments

PERMANOVA: pairwise comparisons

Abundance heatmaps

Column

Phylum

Class

Order

Column

Family

Genus

Species

Abundance barplots

Column

Phylum

Class

Order

Column

Family

Genus

Species

Summary

Column

Highlights

  • Treatment did not have a significant effect on microbiome community richness and diversity

  • Treatment had a significant effect on the microbiome community structure with major differences usually between the control (CS) and other treatments

  • All treatments were dominated by members of the phylum Acidobacteria, Chloroflexi, Plantomycetes and Verrucomicrobia

  • Crenarcheota was the most dominant Archaea phylum regardless of treatment.

About

Created by: Olabiyi Obayomi for Jeff Brady’s Lab.

Institution: Texas A&M AgriLife Research, Texas A&M University.

This report was generated on June 21, 2023.